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  • OER000003007.pdf.jpg
  • Journal article

  • Identification and assessment of cardiolipin interactions with E. coli inner membrane proteins

    • Authors : Corey, Robin A. (2021)

  • Integral membrane proteins are localised and/or regulated by lipids present in the surrounding bilayer. Whilst bacteria such as E. coli have relatively simple membranes when compared to eukaryotic cells, there is ample evidence that many bacterial proteins bind to specific lipids, especially the anionic lipid cardiolipin. Here, we apply molecular dynamics simulations to assess lipid binding to 42 different E. coli inner membrane proteins. O...
  • OER000003033.pdf.jpg
  • Journal article

  • Identification and characterization of novel plasma proteins in drug resistant HIV/AIDS patients by SWATH-MS

    • Authors : Barik, Sushanta Kumar (2021)

  • Acquired immunodeficiency syndrome is one of the most important diseases caused by human immunodeficiency virus. Understanding its molecular pathogenesis is essential to manage the disease at the population level. In this study, a quantitative analysis of plasma proteins was carried out in drug resistant and drug respondent patients using the SWATH-MS. Sequential window acquisition of all theoretical mass spectra (SWATH-MS) is a prime technique to seek...
  • OER000002564.pdf.jpg
  • Journal article

  • Identification of a Novel PARP14 Site Motif and Glycohydrolase Specificity Using TLC-MALDI-TOF

    • Authors : Javed, Zeeshan (2023)

  • Transfer of ADP-ribose (ADPr) from nicotinamide adenine dinucleotide (NAD+) to target proteins is mediated by a class of human poly-ADP-ribose polymerases, PARPs, and removal of ADPr is catalyzed by a family of glycohydrolases. Although thousands of potential ADPr modification sites have been identified using high-throughput mass-spectrometry, relatively little is known about sequence specificity encoded near the modification site. Herein, we present a matrix-assisted ...